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Gene expression

How do microRNAs recognize their targets?

Brennecke J, Stark A, Russell RB, et al. · PLoS biology · 2005

Open access · cc by · source: Europe PMC

Sites with as little as seven base pairs matching the miRNA 5′ end can confer regulation; such 5′-dominant sites are common in conserved 3′ UTRs.

Key findings

Seven-bp complementarity to the miRNA 5′ end suffices for in vivo regulation; genome-wide, 5′-dominant sites occur 2–3× more often than random in conserved 3′ UTRs and were often missed by energy-optimized predictors.

Methodology

Combined experimental and computational analyses of miRNA–target pairing rules in animals.

Limitations

Rules are for animal miRNAs studied; not every predicted site is equally functional in every tissue.

How this study connects

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