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Why do identical cells make different amounts of mRNA?

Mammalian genes switch rarely between ON and OFF, so intrinsically random transcriptional bursts create large cell-to-cell mRNA differences.

Source

Stochastic mRNA synthesis in mammalian cells

Raj A, Peskin CS, Tranchina D, et al. · PLoS biology · 2006

doi.org/10.1371/journal.pbio.0040309Read the full paper ↗1,430 citationscc by

What they did

Used FISH to count individual reporter and native mRNA molecules in clonal mammalian cells and tested whether variation was intrinsic or extrinsic.

What they found

Genes transition infrequently between active and inactive states; bursts are intrinsically random (not mainly extrinsic) and affect whole genomic loci, including RNA polymerase II large-subunit mRNA.

The limits

What it doesn't show

Does not map every mammalian gene’s burst kinetics in vivo tissues, or prove a single molecular switch mechanism for all loci.

Key terms

Transcriptional bursting
Episodes of active mRNA production separated by silent periods.
Intrinsic noise
Randomness from the gene’s own molecular events.
Extrinsic noise
Cell-wide factor differences that co-vary across genes.
FISH
Fluorescence in situ hybridization to visualize single mRNA molecules.
Gene expression noise
Cell-to-cell variation in expression among genetically identical cells.

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Quiz yourself

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Main source of mammalian expression noise here?

Common questions

Is the variation mainly extrinsic like in yeast?

No—the authors argue mammalian transitions are intrinsically random.

Do natural genes burst too?

Yes—including Pol II large-subunit mRNA.

How were molecules counted?

Single-molecule FISH with tandem probe-binding sites.

What causes large expression differences?

Infrequent ON/OFF transitions and bursty synthesis.

More on Gene expression